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Sequences at the top of each column are written 5´ to 3´ according to convention. Open squares at the left of each row are place holders for nucleotides within a restriction endonuclease recognition sequence; arrowheads indicate the point of cleavage. Sequences of complementary strands and their cleavage sites are implied.
blue type = enzymes that recognize only one sequence
black type = enzymes that recognize multiple sequences (degenerate)
Tetra- and Hexa-Nucleotide Recognition Sequences | Penta-Nucleotide Recognition Sequences
AATT | ACGT | AGCT | ATAT | CATG | CCGG | CGCG | CTAG | GATC | GCGC | GGCC | GTAC | TATA | TCGA | TGCA | TTAA | |
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MluCI | FatI | BfuCI DpnII MboI Sau3AI |
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HpyCH2IV | CviAII | MspI HpaII |
BfaI | HinP1I | Csp6I CviQI |
TaqαI | MseI | ||||||||
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AluI CviKI-1 |
BstUI | DpnI | HaeIII PhoI CviKI-1 |
RsaI | HpyCH4V | ||||||||||
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BstKTI | HhaI | ||||||||||||||
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TaiI | NlaIII | |||||||||||||
AATT | ACGT | AGCT | ATAT | CATG | CCGG | CGCG | CTAG | GATC | GCGC | GGCC | GTAC | TATA | TCGA | TGCA | TTAA | |
A ![]() |
ApoI | HindIII* | PciI AflIII |
AgeI*+ BsrFI BsaWI |
MluI AflIII |
SpeI*+ | BglII BstYI |
TatI | ||||||||
A![]() |
AclI | ClaI BspDI |
AseI | |||||||||||||
A![]() |
SspI* | AfeI | StuI | ScaI*+ | ||||||||||||
A ![]() |
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A![]() |
NspI | HaeII | NsiI |
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AATT | ACGT | AGCT | ATAT | CATG | CCGG | CGCG | CTAG | GATC | GCGC | GGCC | GTAC | TATA | TCGA | TGCA | TTAA | |
C![]() |
MfeI*+ | NcoI*+ StyI* BtgI BsaJI |
TspMI XmaI AcoI AvaI BsaJI BsoBI |
BsaJI BtgI |
AvrII BsaJI StyI* |
EagI* EaeI |
BsiWI | SfcI | PaeR7I TliI XhoI+ AvaI BsoBI SmlI |
SfcI | AflII SmlI |
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C![]() |
NdeI | BmeT110I | BmeT110I | |||||||||||||
C![]() |
PmlI BsaAI |
PvuII* MspA1I |
SmaI | MspA1I | ||||||||||||
C![]() |
SacII | PvuI* BsiEI |
BsiEI | |||||||||||||
C![]() |
PstI* | |||||||||||||||
AATT | ACGT | AGCT | ATAT | CATG | CCGG | CGCG | CTAG | GATC | GCGC | GGCC | GTAC | TATA | TCGA | TGCA | TTAA | |
G![]() |
EcoRI*+ ApoI |
NgoMIV BsrFI |
BssHII | NheI*+ | BamHI* BstYI |
KasI BanI |
PspOMI | Acc65I BanI |
SalI*+ | ApaLI | ||||||
G![]() |
BsaHI | NarI BsaHI |
AccI | AccI | ||||||||||||
G![]() |
ZraI | Ecl136II Eco53KI |
EcoRV*+ | Cac8I | NaeI Cac8I |
Cac8I | Cac8I | NlaIV | SfoI NlaIV |
NlaIV | NlaIV | BstZ17I Hpy8I Hpy166II |
HincII Hpy8I Hpy166II |
Hpy8I Hpy166II |
HpaI HincII Hpy8I Hpy166II |
|
G![]() |
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G![]() |
AatII | SacI* BanII BsiHKAI Bsp1286I |
SphI* NspI |
BmtI* | BbeI HaeII |
ApaI BanII BaeGI Bsp1286I |
KpnI*+ | BaeGI Bsp1286I BsiHKAI |
||||||||
AATT | ACGT | AGCT | ATAT | CATG | CCGG | CGCG | CTAG | GATC | GCGC | GGCC | GTAC | TATA | TCGA | TGCA | TTAA | |
T![]() |
BspHI | BspEI BsaWI AcoI |
XbaI+ | BclI * |
EaeI | BsrGI TatI |
||||||||||
T![]() |
Hpy188III | Hpy188III | Hpy188III | Hpy188III | BstBI | |||||||||||
T![]() |
SnaBI BsaAI |
NruI | FspI | MscI | PsiI | DraI | ||||||||||
T![]() |
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T![]() |
* HF (high fidelity) versions of these enzymes are available for simplified reactions and reduced star activity, at no additional cost.
+ A RE-Mix version of this, or the HF version of this enzyme is available.
AA![]() |
AC![]() |
AG![]() |
AT![]() |
CA![]() |
CC![]() |
CG![]() |
CT![]() |
GA![]() |
GC![]() |
GG![]() |
GT![]() |
TA![]() |
TC![]() |
TG![]() |
TT![]() |
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BssKI StyD4I |
MaeIII | |||||||||||||||||||
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DdeI | HinfI | Sau96I | ||||||||||||||||||
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ScrFI | Fnu4HI | BmgT120I | ||||||||||||||||||
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HpyCH4II | Hpy188I | |||||||||||||||||||
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FmuI | ||||||||||||||||||||
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AATT | ACGT | AGCT | ATAT | CATG | CCGG | CGCG | CTAG | GATC | GCGC | GGCC | GTAC | TATA | TCGA | TGCA | TTAA | ||||||
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PspGI | ||||||||||||||||||||
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TfiI | ApeKI TseI |
AvaII | ||||||||||||||||||
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BstNI | ||||||||||||||||||||
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Hpy99I | ||||||||||||||||||||
AATT | ACGT | AGCT | ATAT | CATG | CCGG | CGCG | CTAG | GATC | GCGC | GGCC | GTAC | TATA | TCGA | TGCA | TTAA | ||||||
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Tsp45I | ||||||||||||||||||||
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NciI | ||||||||||||||||||||
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TauI BspUI |
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